User:Egonw/AOP

From Chemical Compounds of Interest
< User:Egonw
Revision as of 19:00, 1 August 2024 by Egonw (talk | contribs) (→‎Adding AOP stressors)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Adding AOP stressors

See this issue: https://github.com/VHP4Safety/ons-compoundwiki/issues/10

SPARQL: https://edu.nl/uwtud

cli

  • groovy inchiToSMILES.groovy | tee results.txt
  • grep -v "^#" results.txt | sort | uniq > cas.smi
  • groovy createWDitemsFromSMILES.groovy -w compoundcloud.wikibase.cloud -d P5 -a P11 -i kegg -l -z P21,Q4761 -f /VHP4Safety/cas.smi

This last command uses "kegg" is dummy identifier, because the script does not know about AOP Stressor identifiers. We can replace these with P31 before we send the output to QuickStatements.